map_block2dmr

map_block2dmr:

Map mutation blocks to differential methylated regions.

Optional Arguments:

  • -h, –help: Show this help message and exit

Required Arguments:

  • -inBKfile IN_SORTEDBLOCK_FILE, –in_sortedBlock_file IN_SORTEDBLOCK_FILE: Bpb3 exported mutation block summary position file in BED format and sorted by chromosome and position

  • -inDMRfile IN_DMR_FILE, –in_dmr_file IN_DMR_FILE: DMRs of all chromosomes in BED format that ranked exported by dmr_analysis dmr_combine_multChrs4rank

Optional Arguments with Default Values:

  • -inFlank, –in_flank_region2block: Add N bp flank regions on both sides of the blocks. Default=0, do not add flank regions.

  • -outFolder, –out_file_folder: Path of output file folder. Default=out_blocks_dmr_single/

  • -min_cutoff, –dmr_min_cutoff: Minimum cutoff value for selecting DMR regions from dmr_analysis exported file. Default=0.6.